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Navigating the amino acid sequence space between functional proteins using  a deep learning framework [PeerJ]
Navigating the amino acid sequence space between functional proteins using a deep learning framework [PeerJ]

Biological structure and function emerge from scaling unsupervised learning  to 250 million protein sequences | PNAS
Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences | PNAS

MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide  Chemical-Protein Interactions: Application to GPCRome Deorphanization |  Journal of Chemical Information and Modeling
MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphanization | Journal of Chemical Information and Modeling

Ultrafast end-to-end protein structure prediction enables high-throughput  exploration of uncharacterized proteins | PNAS
Ultrafast end-to-end protein structure prediction enables high-throughput exploration of uncharacterized proteins | PNAS

Sequence similarity clustering of all MCE proteins. A representative... |  Download Scientific Diagram
Sequence similarity clustering of all MCE proteins. A representative... | Download Scientific Diagram

Clustering huge protein sequence sets in linear time | Nature Communications
Clustering huge protein sequence sets in linear time | Nature Communications

Analysis of plasmid genes by phylogenetic profiling and visualization of  homology relationships using Blast2Network | BMC Bioinformatics | Full Text
Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network | BMC Bioinformatics | Full Text

Sequence Clustering Update
Sequence Clustering Update

GitHub - soedinglab/kClust: kClust is a fast and sensitive clustering  method for the clustering of protein sequences. It is able to cluster large  protein databases down to 20-30% sequence identity. kClust generates
GitHub - soedinglab/kClust: kClust is a fast and sensitive clustering method for the clustering of protein sequences. It is able to cluster large protein databases down to 20-30% sequence identity. kClust generates

Frontiers | Comparison of Methods for Picking the Operational Taxonomic  Units From Amplicon Sequences
Frontiers | Comparison of Methods for Picking the Operational Taxonomic Units From Amplicon Sequences

Visualizing and Clustering Protein Similarity Networks: Sequences,  Structures, and Functions | Journal of Proteome Research
Visualizing and Clustering Protein Similarity Networks: Sequences, Structures, and Functions | Journal of Proteome Research

Novel machine learning approaches revolutionize protein knowledge: Trends  in Biochemical Sciences
Novel machine learning approaches revolutionize protein knowledge: Trends in Biochemical Sciences

Diversity and sequence motifs of the bacterial SecA protein motor -  ScienceDirect
Diversity and sequence motifs of the bacterial SecA protein motor - ScienceDirect

Partitioning clustering algorithms for protein sequence data sets – topic  of research paper in Biological sciences. Download scholarly article PDF  and read for free on CyberLeninka open science hub.
Partitioning clustering algorithms for protein sequence data sets – topic of research paper in Biological sciences. Download scholarly article PDF and read for free on CyberLeninka open science hub.

The hierarchical clustering of protein sequences from complete... |  Download Scientific Diagram
The hierarchical clustering of protein sequences from complete... | Download Scientific Diagram

Sequence Embedding for Clustering and Classification - ProcessMiner
Sequence Embedding for Clustering and Classification - ProcessMiner

Applied Sciences | Free Full-Text | Identification of Thermophilic Proteins  Based on Sequence-Based Bidirectional Representations from  Transformer-Embedding Features
Applied Sciences | Free Full-Text | Identification of Thermophilic Proteins Based on Sequence-Based Bidirectional Representations from Transformer-Embedding Features

Development of a novel clustering tool for linear peptide sequences -  Dhanda - 2018 - Immunology - Wiley Online Library
Development of a novel clustering tool for linear peptide sequences - Dhanda - 2018 - Immunology - Wiley Online Library

Claire McWhite on Twitter: "New preprint with @ProfMonaSingh. We present  vcMSA, a totally new algorithm for multiple sequence alignment that's based  on clustering protein language representations of amino acids. No gaps  penalties,
Claire McWhite on Twitter: "New preprint with @ProfMonaSingh. We present vcMSA, a totally new algorithm for multiple sequence alignment that's based on clustering protein language representations of amino acids. No gaps penalties,

Protein Multiple Sequence Alignments - T-Coffee Tutorials
Protein Multiple Sequence Alignments - T-Coffee Tutorials

How to cluster peptide/protein sequences using cd-hit software? —  Bioinformatics Review
How to cluster peptide/protein sequences using cd-hit software? — Bioinformatics Review

PDF] Minimum Spanning Tree-based Clustering Applied to Protein Sequences in  Early Cancer Diagnosis | Semantic Scholar
PDF] Minimum Spanning Tree-based Clustering Applied to Protein Sequences in Early Cancer Diagnosis | Semantic Scholar

clusterMaker: Creating and Visualizing Cytoscape Clusters
clusterMaker: Creating and Visualizing Cytoscape Clusters

Help [PIR - Protein Information Resource]
Help [PIR - Protein Information Resource]

EFI - Enzyme Similarity Tool
EFI - Enzyme Similarity Tool

2.4 billion sequences now available in the latest MGnify protein database  release | EMBL-EBI
2.4 billion sequences now available in the latest MGnify protein database release | EMBL-EBI